Journal Articles

Saving the Sea Socially: Measuring the Relationship between Content and Gesture on Facebook
Sarah Beth Hopton and R. Mitchell Parry
Communication Design Quarterly Review, 2017, 4(2B), pp. 32-43.
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Whole Reproductive System Non-Negative Matrix Factorization Mass Spectrometry Imaging of an Early-Stage Ovarian Cancer Mouse Model
Martin R.L. Paine, Jaeyeon Kim, Rachel V. Bennett, R. Mitchell Parry, David A. Gaul, May D. Wang, Martin M. Matzuk, Facundo M. Fernandez
PLoS one, 2016, 11(5), 18 pages.
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Multivariate Hypergeometric Similarity Measure
Chanchala Kaddi, R. Mitchell Parry, and May D. Wang
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(6), pp. 1505-1516.
(This is a longer version of the conference paper with the same title.)
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OmniSpect: An Open MATLAB-Based Tool for Visualization and Analysis of Matrix-Assisted Laser Desorption/Ionization and Desorption Electrospray Ionization Mass Spectrometry Images
R. Mitchell Parry, Asiri S. Galhena, Chaminda M. Gamage, Rachel V. Bennett, May D. Wang, Facundo M. Fernandez
Journal of The American Society for Mass Spectrometry, 2013, 24(4), pp. 646-649.
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A Fast Least-squares Algorithm for Population Inference
R. Mitchell Parry and May D. Wang
BMC Bioinformatics, 2013, 14:28.
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Seaweed Allelopathy Against Coral: Surface Distribution of a Seaweed Secondary Metabolite by Imaging Mass Spectrometry
Tiffany D. Andras, Troy S. Alexander, Asiri Gahlena, R. Mitchell Parry, Facundo M. Fernandez, Julia Kubanek, May D. Wang, and Mark E. Hay
Journal of Chemical Ecology, 2012, 38(10), pp. 1203-1214.
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Win Percentage: A Novel Measure for Assessing the Suitability of Machine Classifiers for Biological Problems
R. Mitchell Parry, John H. Phan, and May D. Wang
BMC Bioinformatics, 2012, 13(Suppl 3):S7.
(This is a longer version of the conference paper with the same title.)
[Full Text]
caCORRECT2: Improving the Accuracy and Reliability of Microarray Data in the Presence of Artifacts
Richard A Moffitt, Qiqin Yin-Goen, Todd H. Stokes, R. Mitchell Parry, James H. Torrance, John H. Phan, Andrew N. Young, and May D. Wang
BMC Bioinformatics, 2011, 12:383.
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k-Nearest Neighbor Models for Microarray Gene Expression Analysis and Clinical Outcome Prediction
R. Mitchell Parry, Wendell Jones, Todd H. Stokes, John H. Phan, Richard A. Moffitt, Hong Fang, Leming Shi, Andre Oberthuer, Mattias Fischer, Weida Tong, and May D. Wang
The Pharmacogenomics Journal, 2010, 10, pp. 292-309.
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The MicroArray Quality Control (MAQC)-II Study of Common Practices for the Development and Validation of Microarray-based Predictive Models
Leming Shi, Gregory Campbell, Wendell D Jones, Fabien Campagne, Zhining Wen, Stephen J Walker, et al.
Nature Biotechnology, 2010, 28(8), pp. 827-838.
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Combining Two-Dimensional Diffusion-Ordered Nuclear Magnetic Resonance Spectroscopy, Imaging Desorption Electrospray Ionization Mass Spectrometry, and Direct Analysis in Real-Time Mass Spectrometry for the Integral Investigation of Counterfeit Pharmaceuticals
Leonard Nyadong, Glenn A. Harris, Stephane Balayssac, Asiri S. Galhena, Myriam Malet-Martino, Robert Martino, R. Mitchell Parry, May D. Wang, Facundo M. Fernandez, and Veronique Gilard
Analytical Chemistry, 2009, 81(12), pp. 4803-4812.
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Desorption Electrospray Ionization Mass Spectrometry Reveals Surface-mediated Antifungal Chemical Defense of a Tropical Seaweed
Amy L. Lane, Leonard Nyadong, Asiri S. Galhena, Tonya L. Shearer, E. Paige Stout, R. Mitchell Parry, Mark Kwasnik, May D. Wang, Mark E. Hay, Facundo M. Fernandez, and Julia Kubanek
Proceedings of the National Academy of Sciences of the U.S.A., 2009, 106(18), pp. 7314-7319.
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Conference Papers

Fast Heuristic Detection of Offensive Words in Wordwheel Puzzles
Anand D. Blum and R. Mitchell Parry
AAAI Conference on Artificial Intelligence, 2022.
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SoutheastCon 2022
Estimating the Number of Drones at the Entrance of a Honey Bee Hive using Machine Learning Tools
William O'Brien, Rahman Tashakkori, R. Mitchell Parry, Abdelbaset Hamza, and Joseph Graber
IEEE SoutheastCon, 2022.
A Real-time Audio Effect Plug-in Inspired by the Processes of Traditional Indonesian Gamelan Music
Luke Craig and R. Mitchell Parry
International Conference on Digital Audio Effects, 2019.
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SoutheastCon 2019
BeePhon: A Web-Application for Beehive Audio Exploration
Luke Craig, R. Mitchell Parry, Rahman Tashakkori, and Ian Watts
IEEE SoutheastCon, 2019.
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Measuring the Validity of Algorithms to Automatically Categorize Facebook Content
Sarah Beth Hopton and R. Mitchell Parry
ACM SIGDOC, 2016.
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SoutheastCon 2015
Automated beehive surveillance using computer vision
David Kale, Rahman Tashakkori, and R. Mitchell Parry
IEEE SoutheastCon, 2015.

SoutheastCon 2015
Leaf classification utilizing a convolutional neural network
Timothy Jassmann, Rahman Tashakkori, and R. Mitchell Parry
IEEE SoutheastCon, 2015.

A Nearest Neighbors Analysis of Student Academic Performance in Computer Science
R. Mitchell Parry
ACM Technical Symposium on Computer Science Education, 2015, page 685.

Research Experience for Teachers: Data Analysis & Mining, Visualization, and Image Processing
Rahman Tashakkori, R. Mitchell Parry, Adam Benoit, Rebecca A. Cooper, Jessica L. Jenkins, and Nicholas T. Westveer
ACM Technical Symposium on Computer Science Education, 2014, pp. 193-198.

BCB 2012
Multivariate Hypergeometric Similarity Measure
Chanchala Kaddi, R. Mitchell Parry, and May D. Wang
ACM Conference on Bioinformatics, Computational Biology, and Biomedicine, 2012, pp. 234-241.
(This is a shorter version of the journal article with the same title.)
[Full Text]

BCB 2011
Win Percentage: A Novel Measure for Assessing the Suitability of Machine Classifiers for Biological Problems
R. Mitchell Parry, John H. Phan, and May D. Wang
ACM Conference on Bioinformatics, Computational Biology, and Biomedicine, 2011, pp. 29-38.
(This is a shorter version of the journal article with the same title.)
[Full Text]
Hypergeometric Similarity Measure for Spatial Analysis in Tissue Imaging Mass Spectrometry
Chanchala Kaddi, R. Mitchell Parry, and May D. Wang
IEEE International Conference on Bioinformatics and Biomedicine, 2011, pp. 604-607.
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An Analysis of Scale and Rotation Invariance in the Bag-of-features Method for Histopathological Image Classification
S. Hussain Raza, R. Mitchell Parry, Richard A. Moffitt, Andrew N. Young, and May D. Wang
Medical Image Computing and Computer-Assisted Intervention, 2011, pp. 66-74.
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Automated Classification of Renal Cell Carcinoma Subtypes Using Bag-of-features
S. Hussain Raza, R. Mitchell Parry, Yachna Sharma, Qaiser Chaudry, Richard A. Moffitt, Andrew N. Young, and May D. Wang
International Conference of the IEEE Engineering in Medicine and Biology Society, 2010, pp. 6749-6752.
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Deblurring Molecular Images Using Desorption Electrospray Ionization Mass Spectrometry
R. Mitchell Parry, Asiri S. Galhena, Facundo M. Fernandez, and May D. Wang
International Conference of the IEEE Engineering in Medicine and Biology Society, 2009, pp. 6731-6734.
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Development of an Automatic Quantification Method for Cancer Tissue Microarray Study
Teresa H. Sanders, Todd H. Stokes, Richard A. Moffitt, Qaiser Chaudry, R. Mitchell Parry, and May D. Wang
International Conference of the IEEE Engineering in Medicine and Biology Society, 2009, pp. 3665-3668.

BIBE 2008
Matrix Factorization Techniques for Analysis of Imaging Mass Spectrometry Data
Peter W. Siy, Richard A. Moffitt, R. Mitchell Parry, Yanfeng Chen, Ying Liu, M. Cameron Sullards, Alred H. Merrill, May D. Wang
IEEE International Conference on Bioinformatics and Bioengineering, 2008, 6 pages.
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EMBC 2008
Simple Quantification of Multiplexed Quantum Dot Staining in Clinical Tissue Samples
Matthew L. Caldwell, Richard A. Moffitt, Jian Liu, R. Mitchell Parry, Yachna Sharma, May D. Wang
International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, 1907-1910.
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Incorporating Phase Information for Source Separation via Spectrogram Factorization
R. Mitchell Parry and Irfan Essa
IEEE International Conference on Acoustics, Speech, and Signal Processing, 2007, 2, pp. 661-664.
[Full Text][Presentation]
Phase-aware Non-negative Spectrogram Factorization
R. Mitchell Parry and Irfan Essa
International Conference on Independent Component Analysis and Signal Separation, 2007, pp. 536-543.
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Source Detection Using Repetitive Structure
R. Mitchell Parry and Irfan Essa
IEEE International Conference on Acoustics, Speech, and Signal Processing, 2006, 4, pp. 1093-1096.
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Estimating the Spatial Position of Spectral Components in Audio
R. Mitchell Parry and Irfan Essa
International Conference on Independent Component Analysis and Blind Signal Separation, 2006, pp. 666-673.
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Blind Source Separation Using Repetitive Structure
R. Mitchell Parry and Irfan Essa
International Conference on Digital Audio Effects, 2005, pp. 143-148.
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RO-MAN 2005 Musical Interactions with a Perceptual Robotic Percussionist
Gil Weinberg, Scott Driscoll, and Mitchell Parry
IEEE International Workshop on Robot and Human Interactive Communication, 2005, pp. 456-461.
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Haile - An Interactive Robotic Percussionist
Gil Weinberg, Scott Driscoll, and Mitchell Parry
International Computer Music Conference, 2005, 4 pages.
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Feature Weighting for Segmentation
Mitchell Parry and Irfan Essa
International Conference on Music Information Retrieval, 2004, pp. 10-14.
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ISMIR 2003 Rhythmic Similarity Through Elaboration
Mitchell Parry and Irfan Essa
International Conference on Music Information Retrieval, 2003, pp. 251-252.
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Data Visualization
2001
Acquisition and Display of Real-time Atmospheric Data on Terrain
Tian-yu Jiang, William Ribarsky, Tony Wasilewski, Nickolas Faust, Brendan Hannigan, and Mitchell Parry
Joint Eurographics-IEEE Symposium on Visualization, 2001, pp. 15-24.
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Theses and Technical Reports

Separation and Analysis of Multichannel Signals
R. Mitchell Parry
PhD Dissertation, Georgia Institute of Technology, 2007.
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Musical Complexity and Top 40 Chart Performance
R. Mitchell Parry
Technical Report GIT-GVU-04-04, Georgia Institute of Technology, 2004.
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Organization and Simplification of High-Resolution 3D City Facades
R. Mitchell Parry, William Ribarsky, Christopher D. Shaw, Justin Jang, and Nickolas L. Faust
Technical Report GIT-GVU-02-14, Georgia Institute of Technology, 2002.
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Circuiting Helms Theater with Simulated Annealing
R. Mitchell Parry
4th-year Thesis, CS 200064, University of Virginia, 2000.
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